IL_8P4V_462

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

AGGAU*AGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P4V_462 not in the Motif Atlas

Homologous match to IL_8P9A_463

Geometric discrepancy: 0.0811

The information below is about IL_8P9A_463

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

8P4V|1|sR|A|1678
8P4V|1|sR|G|1679
8P4V|1|sR|G|1680
8P4V|1|sR|A|1681
8P4V|1|sR|U|1682
*
8P4V|1|sR|A|1719
8P4V|1|sR|G|1720
8P4V|1|sR|A|1721
8P4V|1|sR|A|1722
8P4V|1|sR|U|1723

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain CY

60S ribosomal protein L24-A

Chain s6

40S ribosomal protein S6-A

Chain s8

40S ribosomal protein S8-A