IL_8P4V_477
3D structure
- PDB id
- 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with HaterumaimideQ
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- UUCCG*UGA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P4V_477 not in the Motif Atlas
- Homologous match to IL_8P9A_271
- Geometric discrepancy: 0.1161
- The information below is about IL_8P9A_271
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_11415.1
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
8P4V|1|AR|U|1014
8P4V|1|AR|U|1015
8P4V|1|AR|C|1016
8P4V|1|AR|C|1017
8P4V|1|AR|G|1018
*
8P4V|1|AR|U|1034
8P4V|1|AR|G|1035
8P4V|1|AR|A|1036
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain CG
- 60S ribosomal protein L5
- Chain CL
- 60S ribosomal protein L10
- Chain CM
- Large ribosomal subunit protein uL5B
- Chain sM
- Suppressor protein STM1
Coloring options: