IL_8P4V_481

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

UUGGC*GAUUUCCAA

Length

14 nucleotides

Bulged bases

8P4V|1|sR|G|651, 8P4V|1|sR|U|681

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8P4V|1|sR|U|649
8P4V|1|sR|U|650
8P4V|1|sR|G|651
8P4V|1|sR|G|652
8P4V|1|sR|C|653
*
8P4V|1|sR|G|677
8P4V|1|sR|A|678
8P4V|1|sR|U|679
8P4V|1|sR|U|680
8P4V|1|sR|U|681
8P4V|1|sR|C|682
8P4V|1|sR|C|683
8P4V|1|sR|A|684
8P4V|1|sR|A|685

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain d2

40S ribosomal protein S22-A

Chain s9

40S ribosomal protein S9-A