IL_8P4V_489

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GUG*UUAUC

Length

8 nucleotides

Bulged bases

8P4V|1|sR|U|1370, 8P4V|1|sR|A|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P4V_489 not in the Motif Atlas

Homologous match to IL_8P9A_471

Geometric discrepancy: 0.0944

The information below is about IL_8P9A_471

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8P4V|1|sR|G|1352
8P4V|1|sR|U|1353
8P4V|1|sR|G|1354
*
8P4V|1|sR|U|1369
8P4V|1|sR|U|1370
8P4V|1|sR|A|1371
8P4V|1|sR|U|1372
8P4V|1|sR|C|1373

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain c6

40S ribosomal protein S16-A

Chain c9

40S ribosomal protein S19-A

Chain d0

Small ribosomal subunit protein uS10