IL_8P85_050
3D structure
- PDB id
- 8P85 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Fluorolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 8P85|1|1|C|1196, 8P85|1|1|A|1302, 8P85|1|1|U|1305, 8P85|1|1|G|1306
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P85_050 not in the Motif Atlas
- Geometric match to IL_8P9A_280
- Geometric discrepancy: 0.0415
- The information below is about IL_8P9A_280
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_34501.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
8P85|1|1|G|1194
8P85|1|1|A|1195
8P85|1|1|C|1196
8P85|1|1|A|1197
8P85|1|1|C|1198
8P85|1|1|C|1199
8P85|1|1|A|1200
8P85|1|1|C|1201
8P85|1|1|A|1202
8P85|1|1|A|1203
8P85|1|1|A|1204
8P85|1|1|A|1205
*
8P85|1|1|U|1299
8P85|1|1|G|1300
8P85|1|1|A|1301
8P85|1|1|A|1302
8P85|1|1|A|1303
8P85|1|1|A|1304
8P85|1|1|U|1305
8P85|1|1|G|1306
8P85|1|1|G|1307
8P85|1|1|A|1308
8P85|1|1|U|1309
8P85|1|1|G|1310
8P85|1|1|G|1311
8P85|1|1|C|1312
8P85|1|1|G|1313
8P85|1|1|C|1314
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain AG
- 60S ribosomal protein L33-A
- Chain AN
- Ubiquitin-60S ribosomal protein L40
- Chain k
- 60S ribosomal protein L3
- Chain o
- 60S ribosomal protein L7-A
- Chain r
- 60S ribosomal protein L10
- Chain w
- 60S ribosomal protein L16-A
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