Motif IL_34501.1 Version IL_34501.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | break | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 1-24 | 2-23 | 3-22 | 12-15 | 13-14 | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8GLP_080 | 8GLP | 0.1827 | 4 | L5 | LSU rRNA | U | 2038 | G | 2039 | A | 2040 | A | 2042 | A | 2043 | G | 2046 | A | 2047 | U | 2048 | G | 2049 | G | 2050 | C | 2051 | G | 2052 | C | 2053 | * | G | 1933 | A | 1934 | C | 1936 | C | 1937 | C | 1938 | A | 1939 | G | 1940 | A | 1941 | A | 1942 | A | 1943 | A | 1944 | cWW | tSH | tHH | cWW | cWW |
| 2 | IL_9AXU_049 | 9AXU | 0.1292 | 4 | 2 | LSU rRNA | U | 1330 | G | 1331 | A | 1332 | A | 1334 | A | 1335 | G | 1338 | A | 1339 | U | 1340 | G | 1341 | G | 1342 | C | 1343 | G | 1344 | C | 1345 | * | G | 1225 | A | 1226 | A | 1228 | C | 1229 | C | 1230 | A | 1231 | G | 1232 | A | 1233 | A | 1234 | A | 1235 | A | 1236 | cWW | tSH | tHH | cWW | cWW |
| 3 | IL_8P9A_280 | 8P9A | 0.0000 | 4 | AR | LSU rRNA | U | 1299 | G | 1300 | A | 1301 | A | 1303 | A | 1304 | G | 1307 | A | 1308 | U | 1309 | G | 1310 | G | 1311 | C | 1312 | G | 1313 | C | 1314 | * | G | 1194 | A | 1195 | A | 1197 | C | 1198 | C | 1199 | A | 1200 | C | 1201 | A | 1202 | A | 1203 | A | 1204 | A | 1205 | cWW | tSH | tHH | cWW | cWW |
| 4 | IL_8OI5_055 | 8OI5 | 0.0713 | 4 | 1 | LSU rRNA | U | 1295 | G | 1296 | A | 1297 | A | 1299 | A | 1300 | G | 1303 | A | 1304 | U | 1305 | G | 1306 | G | 1307 | C | 1308 | G | 1309 | C | 1310 | * | G | 1190 | A | 1191 | A | 1193 | C | 1194 | C | 1195 | A | 1196 | C | 1197 | A | 1198 | A | 1199 | A | 1200 | A | 1201 | cWW | tSH | tHH | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAAAUGGAUGGCGC*GACACCACAAAA | 2 |
| UGAAAAUGGAUGGCGC*GACCCCAGAAAA | 1 |
| UGAAAAUGGAUGGCGC*GACACCAGAAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAAAUGGAUGGCG*ACACCACAAA | 2 |
| GAAAAUGGAUGGCG*ACCCCAGAAA | 1 |
| GAAAAUGGAUGGCG*ACACCAGAAA | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW
- Heat map statistics
- Min 0.07 | Avg 0.12 | Max 0.22
Coloring options: