IL_8P85_119

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AUA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P85_119 not in the Motif Atlas

Geometric match to IL_3BNR_012

Geometric discrepancy: 0.147

The information below is about IL_3BNR_012

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

8P85|1|1|A|3168
8P85|1|1|U|3169
8P85|1|1|A|3170
*
8P85|1|1|U|3280
8P85|1|1|U|3281
8P85|1|1|U|3282

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AG

60S ribosomal protein L33-A