IL_8P85_132

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCC*GUUGU

Length

8 nucleotides

Bulged bases

8P85|1|1|U|3354, 8P85|1|1|U|3355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P85_132 not in the Motif Atlas

Geometric match to IL_8K85_007

Geometric discrepancy: 0.2349

The information below is about IL_8K85_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8P85|1|1|G|3348
8P85|1|1|C|3349
8P85|1|1|C|3350
*
8P85|1|1|G|3353
8P85|1|1|U|3354
8P85|1|1|U|3355
8P85|1|1|G|3356
8P85|1|1|U|3357

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 5

60S ribosomal protein L22-A

Chain J

40S ribosomal protein S8-A