IL_8P85_172
3D structure
- PDB id
- 8P85 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Fluorolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 8P85|1|A|A|579
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P85_172 not in the Motif Atlas
- Geometric match to IL_8CRE_423
- Geometric discrepancy: 0.117
- The information below is about IL_8CRE_423
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8P85|1|A|G|562
8P85|1|A|U|563
8P85|1|A|G|564
8P85|1|A|C|565
8P85|1|A|C|566
8P85|1|A|A|567
8P85|1|A|G|568
*
8P85|1|A|C|575
8P85|1|A|G|576
8P85|1|A|G|577
8P85|1|A|U|578
8P85|1|A|A|579
8P85|1|A|A|580
8P85|1|A|U|581
8P85|1|A|U|582
8P85|1|A|C|583
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain E
- Small ribosomal subunit protein uS3
- Chain Y
- 40S ribosomal protein S23-A
- Chain f
- 40S ribosomal protein S30-A
- Chain i
- Suppressor protein STM1
Coloring options: