IL_8P85_173

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

8P85|1|A|A|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P85_173 not in the Motif Atlas

Geometric match to IL_8P9A_405

Geometric discrepancy: 0.0667

The information below is about IL_8P9A_405

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

8P85|1|A|G|616
8P85|1|A|U|617
8P85|1|A|U|618
8P85|1|A|A|619
8P85|1|A|A|620
8P85|1|A|A|621
8P85|1|A|A|622
*
8P85|1|A|U|1104
8P85|1|A|C|1105

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain Y

40S ribosomal protein S23-A

Chain b

Small ribosomal subunit protein eS26B