IL_8P85_175
3D structure
- PDB id
- 8P85 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Fluorolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P85_175 not in the Motif Atlas
- Geometric match to IL_8CRE_426
- Geometric discrepancy: 0.0569
- The information below is about IL_8CRE_426
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_05821.1
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
8P85|1|A|C|627
8P85|1|A|G|628
8P85|1|A|U|629
8P85|1|A|A|630
8P85|1|A|G|631
*
8P85|1|A|U|968
8P85|1|A|C|969
8P85|1|A|A|970
8P85|1|A|A|971
8P85|1|A|G|972
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 40S ribosomal protein S11-A
- Chain O
- 40S ribosomal protein S13
- Chain X
- 40S ribosomal protein S22-A
- Chain Y
- 40S ribosomal protein S23-A
Coloring options: