IL_8P85_193
3D structure
- PDB id
- 8P85 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Fluorolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAGUAUG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P85_193 not in the Motif Atlas
- Geometric match to IL_8P9A_428
- Geometric discrepancy: 0.07
- The information below is about IL_8P9A_428
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_84044.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8P85|1|A|G|1111
8P85|1|A|G|1112
8P85|1|A|A|1113
8P85|1|A|G|1114
8P85|1|A|U|1115
8P85|1|A|A|1116
8P85|1|A|U|1117
8P85|1|A|G|1118
*
8P85|1|A|U|1129
8P85|1|A|G|1130
8P85|1|A|A|1131
8P85|1|A|A|1132
8P85|1|A|A|1133
8P85|1|A|C|1134
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain AO
- Large ribosomal subunit protein eL41B
- Chain Y
- 40S ribosomal protein S23-A
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