IL_8P85_402

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P85_402 not in the Motif Atlas

Geometric match to IL_8P9A_402

Geometric discrepancy: 0.0318

The information below is about IL_8P9A_402

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

8P85|1|sR|A|550
8P85|1|sR|G|551
8P85|1|sR|G|552
8P85|1|sR|G|553
8P85|1|sR|C|554
8P85|1|sR|A|555
8P85|1|sR|A|556
8P85|1|sR|G|557
*
8P85|1|sR|C|587
8P85|1|sR|U|588

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain e0

40S ribosomal protein S30-A

Chain s2

40S ribosomal protein S2

Chain s9

40S ribosomal protein S9-A