IL_8P9A_402

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

8P9A|1|sR|A|550
8P9A|1|sR|G|551
8P9A|1|sR|G|552
8P9A|1|sR|G|553
8P9A|1|sR|C|554
8P9A|1|sR|A|555
8P9A|1|sR|A|556
8P9A|1|sR|G|557
*
8P9A|1|sR|C|587
8P9A|1|sR|U|588

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain e0

40S ribosomal protein S30-A

Chain s2

40S ribosomal protein S2

Chain s9

40S ribosomal protein S9-A