IL_8P85_409

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUGGCCG*UGGAUUUCCAA

Length

18 nucleotides

Bulged bases

8P85|1|sR|G|651, 8P85|1|sR|U|681

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P85_409 not in the Motif Atlas

Geometric match to IL_8P9A_409

Geometric discrepancy: 0.0252

The information below is about IL_8P9A_409

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73002.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

Number of instances in this motif group

1

Unit IDs

8P85|1|sR|U|649
8P85|1|sR|U|650
8P85|1|sR|G|651
8P85|1|sR|G|652
8P85|1|sR|C|653
8P85|1|sR|C|654
8P85|1|sR|G|655
*
8P85|1|sR|U|675
8P85|1|sR|G|676
8P85|1|sR|G|677
8P85|1|sR|A|678
8P85|1|sR|U|679
8P85|1|sR|U|680
8P85|1|sR|U|681
8P85|1|sR|C|682
8P85|1|sR|C|683
8P85|1|sR|A|684
8P85|1|sR|A|685

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain d2

40S ribosomal protein S22-A

Chain s9

40S ribosomal protein S9-A