IL_8P9A_409

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUGGCCG*UGGAUUUCCAA

Length

18 nucleotides

Bulged bases

8P9A|1|sR|G|651, 8P9A|1|sR|U|681

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73002.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

Number of instances in this motif group

1

Unit IDs

8P9A|1|sR|U|649
8P9A|1|sR|U|650
8P9A|1|sR|G|651
8P9A|1|sR|G|652
8P9A|1|sR|C|653
8P9A|1|sR|C|654
8P9A|1|sR|G|655
*
8P9A|1|sR|U|675
8P9A|1|sR|G|676
8P9A|1|sR|G|677
8P9A|1|sR|A|678
8P9A|1|sR|U|679
8P9A|1|sR|U|680
8P9A|1|sR|U|681
8P9A|1|sR|C|682
8P9A|1|sR|C|683
8P9A|1|sR|A|684
8P9A|1|sR|A|685

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain d2

40S ribosomal protein S22-A

Chain s9

40S ribosomal protein S9-A