IL_8P85_416

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGGUU*GACCA

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P85_416 not in the Motif Atlas

Geometric match to IL_8VMB_003

Geometric discrepancy: 0.3341

The information below is about IL_8VMB_003

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

8P85|1|sR|U|822
8P85|1|sR|G|823
8P85|1|sR|G|824
8P85|1|sR|U|825
8P85|1|sR|U|826
*
8P85|1|sR|G|846
8P85|1|sR|A|847
8P85|1|sR|C|848
8P85|1|sR|C|849
8P85|1|sR|A|850

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain CT

60S ribosomal protein L19-A

Chain c1

40S ribosomal protein S11-A