IL_8P85_436

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AUAAGGAUUG*CUUGAUUU

Length

18 nucleotides

Bulged bases

8P85|1|sR|G|1228, 8P85|1|sR|U|1257

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P85_436 not in the Motif Atlas

Geometric match to IL_8P9A_470

Geometric discrepancy: 0.0297

The information below is about IL_8P9A_470

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28304.1

Basepair signature

cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8P85|1|sR|A|1224
8P85|1|sR|U|1225
8P85|1|sR|A|1226
8P85|1|sR|A|1227
8P85|1|sR|G|1228
8P85|1|sR|G|1229
8P85|1|sR|A|1230
8P85|1|sR|U|1231
8P85|1|sR|U|1232
8P85|1|sR|G|1233
*
8P85|1|sR|C|1252
8P85|1|sR|U|1253
8P85|1|sR|U|1254
8P85|1|sR|G|1255
8P85|1|sR|A|1256
8P85|1|sR|U|1257
8P85|1|sR|U|1258
8P85|1|sR|U|1259

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain c0

Small ribosomal subunit protein eS10A,Small ribosomal subunit protein eS10A,40S ribosomal protein S10-A

Chain d9

Small ribosomal subunit protein uS14A

Chain e1

Ubiquitin