IL_8P85_453

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8P85|1|sR|C|1637, 8P85|1|sR|A|1766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P85_453 not in the Motif Atlas

Geometric match to IL_8P9A_452

Geometric discrepancy: 0.0444

The information below is about IL_8P9A_452

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

8P85|1|sR|C|1636
8P85|1|sR|C|1637
8P85|1|sR|G|1638
*
8P85|1|sR|C|1764
8P85|1|sR|A|1765
8P85|1|sR|A|1766
8P85|1|sR|G|1767

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain c4

40S ribosomal protein S14-B

Chain d6

Small ribosomal subunit protein eS26B