IL_8P8M_001

3D structure

PDB id

8P8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit, RPL39 deletion

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GAC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P8M_001 not in the Motif Atlas

Geometric match to IL_3ICQ_003

Geometric discrepancy: 0.177

The information below is about IL_3ICQ_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

8P8M|1|A|G|5
8P8M|1|A|A|6
8P8M|1|A|C|7
*
8P8M|1|LD|G|152
8P8M|1|LD|U|153
8P8M|1|LD|C|154

Current chains

Chain A

25S rRNA

Chain LD

5.8S rRNA

Nearby chains

Chain LL

60S ribosomal protein L8-A

Chain QX

60S ribosomal protein L25