IL_8P8M_009

3D structure

PDB id

8P8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit, RPL39 deletion

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CAAC*GUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P8M_009 not in the Motif Atlas

Geometric match to IL_5TBW_064

Geometric discrepancy: 0.2571

The information below is about IL_5TBW_064

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

8P8M|1|A|C|163
8P8M|1|A|A|164
8P8M|1|A|A|165
8P8M|1|A|C|166
*
8P8M|1|A|G|256
8P8M|1|A|U|257
8P8M|1|A|G|258

Current chains

Chain A

25S rRNA

Nearby chains

Chain JT

60S ribosomal protein L13-A

Chain RH

60S ribosomal protein L35-A