IL_8P8M_030

3D structure

PDB id

8P8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit, RPL39 deletion

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P8M_030 not in the Motif Atlas

Homologous match to IL_8C3A_033

Geometric discrepancy: 0.1071

The information below is about IL_8C3A_033

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

8P8M|1|A|U|834
8P8M|1|A|G|835
8P8M|1|A|A|836
8P8M|1|A|A|837
8P8M|1|A|G|838
*
8P8M|1|A|U|855
8P8M|1|A|G|856
8P8M|1|A|G|857
8P8M|1|A|A|858
8P8M|1|A|G|859

Current chains

Chain A

25S rRNA

Nearby chains

Chain LF

60S ribosomal protein L2-A

Chain QQ

60S ribosomal protein L19-A

Chain RT

60S ribosomal protein L43-A