IL_8P8M_084

3D structure

PDB id

8P8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit, RPL39 deletion

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

8P8M|1|A|U|2209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P8M_084 not in the Motif Atlas

Geometric match to IL_5TBW_087

Geometric discrepancy: 0.2374

The information below is about IL_5TBW_087

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8P8M|1|A|G|2206
8P8M|1|A|A|2207
8P8M|1|A|A|2208
8P8M|1|A|U|2209
8P8M|1|A|G|2210
*
8P8M|1|A|C|2235
8P8M|1|A|G|2236
8P8M|1|A|C|2237

Current chains

Chain A

25S rRNA

Nearby chains