IL_8P8M_129
3D structure
- PDB id
- 8P8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit, RPL39 deletion
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- UGUAAG*CUGAG
- Length
- 11 nucleotides
- Bulged bases
- 8P8M|1|A|G|3369
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P8M_129 not in the Motif Atlas
- Homologous match to IL_5TBW_133
- Geometric discrepancy: 0.0924
- The information below is about IL_5TBW_133
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_83162.8
- Basepair signature
- cWW-cWW-tSH-cWW-tHH-L
- Number of instances in this motif group
- 4
Unit IDs
8P8M|1|A|U|3332
8P8M|1|A|G|3333
8P8M|1|A|U|3334
8P8M|1|A|A|3335
8P8M|1|A|A|3336
8P8M|1|A|G|3337
*
8P8M|1|A|C|3367
8P8M|1|A|U|3368
8P8M|1|A|G|3369
8P8M|1|A|A|3370
8P8M|1|A|G|3371
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain LG
- 60S ribosomal protein L3
- Chain QW
- 60S ribosomal protein L24-A
- Chain RD
- 60S ribosomal protein L31-A
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