IL_8P8M_134

3D structure

PDB id

8P8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit, RPL39 deletion

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CC*GUUG

Length

6 nucleotides

Bulged bases

8P8M|1|A|U|3354, 8P8M|1|A|U|3355

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P8M_134 not in the Motif Atlas

Homologous match to IL_5TBW_136

Geometric discrepancy: 0.3423

The information below is about IL_5TBW_136

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8P8M|1|A|C|3349
8P8M|1|A|C|3350
*
8P8M|1|A|G|3353
8P8M|1|A|U|3354
8P8M|1|A|U|3355
8P8M|1|A|G|3356

Current chains

Chain A

25S rRNA

Nearby chains

Chain QU

60S ribosomal protein L22-A