IL_8P8N_002
3D structure
- PDB id
- 8P8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mouse RPL39 integrated into the yeast 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- CC*GCG
- Length
- 5 nucleotides
- Bulged bases
- 8P8N|1|LD|C|151
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P8N_002 not in the Motif Atlas
- Geometric match to IL_5TBW_002
- Geometric discrepancy: 0.1902
- The information below is about IL_5TBW_002
- Detailed Annotation
- Single bulged C
- Broad Annotation
- No text annotation
- Motif group
- IL_61258.13
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 40
Unit IDs
8P8N|1|A|C|7
8P8N|1|A|C|8
*
8P8N|1|LD|G|150
8P8N|1|LD|C|151
8P8N|1|LD|G|152
Current chains
- Chain A
- 25S rRNA
- Chain LD
- 5.8S rRNA
Nearby chains
- Chain JV
- 60S ribosomal protein L15-A
- Chain LL
- 60S ribosomal protein L8-A
- Chain QX
- 60S ribosomal protein L25
Coloring options: