3D structure

PDB id
8P8N (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mouse RPL39 integrated into the yeast 60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
2.15 Å

Loop

Sequence
CC*GCG
Length
5 nucleotides
Bulged bases
8P8N|1|LD|C|151
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8P8N_002 not in the Motif Atlas
Geometric match to IL_5TBW_002
Geometric discrepancy: 0.1902
The information below is about IL_5TBW_002
Detailed Annotation
Single bulged C
Broad Annotation
No text annotation
Motif group
IL_61258.13
Basepair signature
cWW-L-cWW
Number of instances in this motif group
40

Unit IDs

8P8N|1|A|C|7
8P8N|1|A|C|8
*
8P8N|1|LD|G|150
8P8N|1|LD|C|151
8P8N|1|LD|G|152

Current chains

Chain A
25S rRNA
Chain LD
5.8S rRNA

Nearby chains

Chain JV
60S ribosomal protein L15-A
Chain LL
60S ribosomal protein L8-A
Chain QX
60S ribosomal protein L25

Coloring options:


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