IL_8P8N_002

3D structure

PDB id

8P8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39 integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

8P8N|1|LD|C|151

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P8N_002 not in the Motif Atlas

Geometric match to IL_5TBW_002

Geometric discrepancy: 0.1902

The information below is about IL_5TBW_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

8P8N|1|A|C|7
8P8N|1|A|C|8
*
8P8N|1|LD|G|150
8P8N|1|LD|C|151
8P8N|1|LD|G|152

Current chains

Chain A

25S rRNA

Chain LD

5.8S rRNA

Nearby chains

Chain JV

60S ribosomal protein L15-A

Chain LL

60S ribosomal protein L8-A

Chain QX

60S ribosomal protein L25