IL_8P8N_043

3D structure

PDB id

8P8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39 integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

UUCCG*UGA

Length

8 nucleotides

Bulged bases

8P8N|1|A|C|1016, 8P8N|1|A|C|1017

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P8N_043 not in the Motif Atlas

Geometric match to IL_3TD0_005

Geometric discrepancy: 0.3842

The information below is about IL_3TD0_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

8P8N|1|A|U|1014
8P8N|1|A|U|1015
8P8N|1|A|C|1016
8P8N|1|A|C|1017
8P8N|1|A|G|1018
*
8P8N|1|A|U|1034
8P8N|1|A|G|1035
8P8N|1|A|A|1036

Current chains

Chain A

25S rRNA

Nearby chains

Chain LN

60S ribosomal protein L10

Chain LO

60S ribosomal protein L11-A