IL_8P8N_083

3D structure

PDB id

8P8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39 integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

8P8N|1|A|U|2209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P8N_083 not in the Motif Atlas

Homologous match to IL_5TBW_087

Geometric discrepancy: 0.2031

The information below is about IL_5TBW_087

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8P8N|1|A|G|2206
8P8N|1|A|A|2207
8P8N|1|A|A|2208
8P8N|1|A|U|2209
8P8N|1|A|G|2210
*
8P8N|1|A|C|2235
8P8N|1|A|G|2236
8P8N|1|A|C|2237

Current chains

Chain A

25S rRNA

Nearby chains