IL_8P8N_084

3D structure

PDB id

8P8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39 integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P8N_084 not in the Motif Atlas

Homologous match to IL_5TBW_088

Geometric discrepancy: 0.1053

The information below is about IL_5TBW_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8P8N|1|A|U|2211
8P8N|1|A|C|2212
8P8N|1|A|A|2213
8P8N|1|A|A|2214
8P8N|1|A|A|2215
8P8N|1|A|G|2216
8P8N|1|A|U|2217
*
8P8N|1|A|A|2228
8P8N|1|A|A|2229
8P8N|1|A|C|2230
8P8N|1|A|C|2231
8P8N|1|A|A|2232
8P8N|1|A|A|2233
8P8N|1|A|G|2234

Current chains

Chain A

25S rRNA

Nearby chains

Chain RI

60S ribosomal protein L36-A