IL_8P8N_086

3D structure

PDB id

8P8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39 integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

8P8N|1|A|A|2281, 8P8N|1|A|C|2287, 8P8N|1|A|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P8N_086 not in the Motif Atlas

Homologous match to IL_5TBW_090

Geometric discrepancy: 0.0536

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8P8N|1|A|C|2277
8P8N|1|A|C|2278
8P8N|1|A|A|2279
8P8N|1|A|A|2280
8P8N|1|A|A|2281
8P8N|1|A|U|2282
8P8N|1|A|G|2283
8P8N|1|A|C|2284
8P8N|1|A|C|2285
8P8N|1|A|U|2286
8P8N|1|A|C|2287
8P8N|1|A|G|2288
*
8P8N|1|A|C|2304
8P8N|1|A|G|2305
8P8N|1|A|C|2306
8P8N|1|A|G|2307

Current chains

Chain A

25S rRNA

Nearby chains