IL_8P8N_113

3D structure

PDB id

8P8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39 integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

8P8N|1|A|U|3056, 8P8N|1|A|U|3058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P8N_113 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.0637

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

8P8N|1|A|U|3054
8P8N|1|A|U|3055
8P8N|1|A|U|3056
8P8N|1|A|U|3057
8P8N|1|A|U|3058
8P8N|1|A|G|3059
*
8P8N|1|A|C|3084
8P8N|1|A|G|3085
8P8N|1|A|A|3086
8P8N|1|A|A|3087
8P8N|1|A|G|3088

Current chains

Chain A

25S rRNA

Nearby chains

Chain LG

60S ribosomal protein L3

Chain QW

60S ribosomal protein L24-A

Chain RD

60S ribosomal protein L31-A