IL_8P8N_123

3D structure

PDB id

8P8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39 integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P8N_123 not in the Motif Atlas

Geometric match to IL_4UYK_003

Geometric discrepancy: 0.1184

The information below is about IL_4UYK_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

8P8N|1|A|C|3235
8P8N|1|A|U|3236
8P8N|1|A|U|3237
8P8N|1|A|G|3238
*
8P8N|1|A|C|3249
8P8N|1|A|U|3250
8P8N|1|A|U|3251
8P8N|1|A|G|3252

Current chains

Chain A

25S rRNA

Nearby chains

Chain JW

60S ribosomal protein L16-A