IL_8P8N_134
3D structure
- PDB id
- 8P8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mouse RPL39 integrated into the yeast 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- ACGCAGCGAAAUGCGAUACGU*AAUCU
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P8N_134 not in the Motif Atlas
- Geometric match to IL_5TBW_144
- Geometric discrepancy: 0.0619
- The information below is about IL_5TBW_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
8P8N|1|LD|A|44
8P8N|1|LD|C|45
8P8N|1|LD|G|46
8P8N|1|LD|C|47
8P8N|1|LD|A|48
8P8N|1|LD|G|49
8P8N|1|LD|C|50
8P8N|1|LD|G|51
8P8N|1|LD|A|52
8P8N|1|LD|A|53
8P8N|1|LD|A|54
8P8N|1|LD|U|55
8P8N|1|LD|G|56
8P8N|1|LD|C|57
8P8N|1|LD|G|58
8P8N|1|LD|A|59
8P8N|1|LD|U|60
8P8N|1|LD|A|61
8P8N|1|LD|C|62
8P8N|1|LD|G|63
8P8N|1|LD|U|64
*
8P8N|1|LD|A|96
8P8N|1|LD|A|97
8P8N|1|LD|U|98
8P8N|1|LD|C|99
8P8N|1|LD|U|100
Current chains
- Chain LD
- 5.8S rRNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein eL39
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain QX
- 60S ribosomal protein L25
- Chain RH
- 60S ribosomal protein L35-A
- Chain RJ
- 60S ribosomal protein L37-A
Coloring options: