IL_8P8N_146

3D structure

PDB id

8P8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39 integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

UCAAC*GGA

Length

8 nucleotides

Bulged bases

8P8N|1|A|G|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P8N_146 not in the Motif Atlas

Homologous match to IL_8P9A_290

Geometric discrepancy: 0.1039

The information below is about IL_8P9A_290

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

8P8N|1|A|U|1501
8P8N|1|A|C|1502
8P8N|1|A|A|1503
8P8N|1|A|A|1504
8P8N|1|A|C|1505
*
8P8N|1|A|G|1513
8P8N|1|A|G|1514
8P8N|1|A|A|1515

Current chains

Chain A

25S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein eL39

Chain QO

60S ribosomal protein L17-A

Chain QQ

60S ribosomal protein L19-A