IL_8P8U_065

3D structure

PDB id

8P8U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

GG*UUUC

Length

6 nucleotides

Bulged bases

8P8U|1|A|U|1820, 8P8U|1|A|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P8U_065 not in the Motif Atlas

Geometric match to IL_4V9F_021

Geometric discrepancy: 0.2272

The information below is about IL_4V9F_021

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.1

Basepair signature

cWW-cWW

Number of instances in this motif group

27

Unit IDs

8P8U|1|A|G|1623
8P8U|1|A|G|1624
*
8P8U|1|A|U|1819
8P8U|1|A|U|1820
8P8U|1|A|U|1821
8P8U|1|A|C|1822

Current chains

Chain A

25S rRNA

Nearby chains

Chain RG

60S ribosomal protein L34-A

Chain RM

60S ribosomal protein L38