3D structure

PDB id
8P8U (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
2.23 Å

Loop

Sequence
UACGAAUAAG*CGCUGAA
Length
17 nucleotides
Bulged bases
8P8U|1|A|A|3180, 8P8U|1|A|A|3186, 8P8U|1|A|U|3207, 8P8U|1|A|A|3209
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8P8U_121 not in the Motif Atlas
Homologous match to IL_5TBW_124
Geometric discrepancy: 0.0618
The information below is about IL_5TBW_124
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_15174.1
Basepair signature
cWW-L-R-L-R-L-cWW-cSS-cWW-L
Number of instances in this motif group
2

Unit IDs

8P8U|1|A|U|3179
8P8U|1|A|A|3180
8P8U|1|A|C|3181
8P8U|1|A|G|3182
8P8U|1|A|A|3183
8P8U|1|A|A|3184
8P8U|1|A|U|3185
8P8U|1|A|A|3186
8P8U|1|A|A|3187
8P8U|1|A|G|3188
*
8P8U|1|A|C|3204
8P8U|1|A|G|3205
8P8U|1|A|C|3206
8P8U|1|A|U|3207
8P8U|1|A|G|3208
8P8U|1|A|A|3209
8P8U|1|A|A|3210

Current chains

Chain A
25S rRNA

Nearby chains

Chain JU
60S ribosomal protein L14-A
Chain JW
60S ribosomal protein L16-A
Chain LJ
60S ribosomal protein L6-A
Chain LM
60S ribosomal protein L9-A
Chain QS
60S ribosomal protein L20-A
Chain RF
60S ribosomal protein L33-A

Coloring options:


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