3D structure

PDB id
8P9A (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S yeast ribosome in complex with Methyllissoclimide
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
CGUAU*AAG
Length
8 nucleotides
Bulged bases
8P9A|1|1|A|1103
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8P9A_034 not in the Motif Atlas
Homologous match to IL_8P9A_264
Geometric discrepancy: 0.2371
The information below is about IL_8P9A_264
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_25463.1
Basepair signature
cWW-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

8P9A|1|1|C|977
8P9A|1|1|G|978
8P9A|1|1|U|979
8P9A|1|1|A|980
8P9A|1|1|U|981
*
8P9A|1|1|A|1102
8P9A|1|1|A|1103
8P9A|1|1|G|1104

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain AC
60S ribosomal protein L29
Chain o
60S ribosomal protein L7-A
Chain y
60S ribosomal protein L18-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1674 s