IL_8P9A_121

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

ACAC*GCGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P9A_121 not in the Motif Atlas

Geometric match to IL_5TBW_504

Geometric discrepancy: 0.136

The information below is about IL_5TBW_504

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25872.2

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

6

Unit IDs

8P9A|1|1|A|3163
8P9A|1|1|C|3164
8P9A|1|1|A|3165
8P9A|1|1|C|3166
*
8P9A|1|1|G|3284
8P9A|1|1|C|3285
8P9A|1|1|G|3286
8P9A|1|1|U|3287

Current chains

Chain 1

25S ribosomal RNA

Nearby chains