IL_8P9A_135

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCC*GUUGU

Length

8 nucleotides

Bulged bases

8P9A|1|1|U|3354, 8P9A|1|1|U|3355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P9A_135 not in the Motif Atlas

Geometric match to IL_6CZR_118

Geometric discrepancy: 0.2369

The information below is about IL_6CZR_118

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

183

Unit IDs

8P9A|1|1|G|3348
8P9A|1|1|C|3349
8P9A|1|1|C|3350
*
8P9A|1|1|G|3353
8P9A|1|1|U|3354
8P9A|1|1|U|3355
8P9A|1|1|G|3356
8P9A|1|1|U|3357

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 5

60S ribosomal protein L22-A

Chain J

40S ribosomal protein S8-A