IL_8P9A_155

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8P9A|1|A|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P9A_155 not in the Motif Atlas

Homologous match to IL_8P9A_383

Geometric discrepancy: 0.1095

The information below is about IL_8P9A_383

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8P9A|1|A|G|143
8P9A|1|A|U|144
8P9A|1|A|A|145
8P9A|1|A|U|146
8P9A|1|A|A|147
8P9A|1|A|A|148
8P9A|1|A|C|149
*
8P9A|1|A|G|165
8P9A|1|A|C|166
8P9A|1|A|U|167
8P9A|1|A|A|168
8P9A|1|A|A|169
8P9A|1|A|U|170
8P9A|1|A|A|171
8P9A|1|A|C|172

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain H

40S ribosomal protein S6-A

Chain Z

40S ribosomal protein S24-A