IL_8P9A_161

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAUG*UGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P9A_161 not in the Motif Atlas

Homologous match to IL_8P9A_389

Geometric discrepancy: 0.2581

The information below is about IL_8P9A_389

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15698.5

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

8P9A|1|A|C|270
8P9A|1|A|A|271
8P9A|1|A|U|272
8P9A|1|A|G|273
*
8P9A|1|A|U|283
8P9A|1|A|G|284
8P9A|1|A|G|285

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain H

40S ribosomal protein S6-A