IL_8P9A_279

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUCAUCAG*CUCAAG

Length

14 nucleotides

Bulged bases

8P9A|1|AR|U|1191, 8P9A|1|AR|C|1192, 8P9A|1|AR|C|1316, 8P9A|1|AR|A|1318

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77278.1

Basepair signature

cWW-tWW-L-tWW-cWW-L

Number of instances in this motif group

2

Unit IDs

8P9A|1|AR|C|1187
8P9A|1|AR|U|1188
8P9A|1|AR|C|1189
8P9A|1|AR|A|1190
8P9A|1|AR|U|1191
8P9A|1|AR|C|1192
8P9A|1|AR|A|1193
8P9A|1|AR|G|1194
*
8P9A|1|AR|C|1314
8P9A|1|AR|U|1315
8P9A|1|AR|C|1316
8P9A|1|AR|A|1317
8P9A|1|AR|A|1318
8P9A|1|AR|G|1319

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CK

60S ribosomal protein L9-A

Chain CO

60S ribosomal protein L14-A

Chain CQ

60S ribosomal protein L16-A

Chain CU

60S ribosomal protein L20-A

Chain DO

Ubiquitin-60S ribosomal protein L40