IL_8P9A_291

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUAAG*CGAAAG

Length

11 nucleotides

Bulged bases

8P9A|1|AR|A|1588, 8P9A|1|AR|A|1589

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8P9A|1|AR|C|1532
8P9A|1|AR|U|1533
8P9A|1|AR|A|1534
8P9A|1|AR|A|1535
8P9A|1|AR|G|1536
*
8P9A|1|AR|C|1585
8P9A|1|AR|G|1586
8P9A|1|AR|A|1587
8P9A|1|AR|A|1588
8P9A|1|AR|A|1589
8P9A|1|AR|G|1590

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain AT

5.8S ribosomal RNA; 5.8S rRNA

Chain CD

60S ribosomal protein L2-A

Chain DI

60S ribosomal protein L34-A

Chain DL

60S ribosomal protein L37-A

Chain DN

60S ribosomal protein L39