3D structure

PDB id
8P9A (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S yeast ribosome in complex with Methyllissoclimide
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
UCUUC*GGAAUA
Length
11 nucleotides
Bulged bases
8P9A|1|AR|U|1629, 8P9A|1|AR|U|1815
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_56317.1
Basepair signature
cWW-L-R-L-R-L-cWW
Number of instances in this motif group
2

Unit IDs

8P9A|1|AR|U|1627
8P9A|1|AR|C|1628
8P9A|1|AR|U|1629
8P9A|1|AR|U|1630
8P9A|1|AR|C|1631
*
8P9A|1|AR|G|1811
8P9A|1|AR|G|1812
8P9A|1|AR|A|1813
8P9A|1|AR|A|1814
8P9A|1|AR|U|1815
8P9A|1|AR|A|1816

Current chains

Chain AR
25S ribosomal RNA

Nearby chains

Chain DB
60S ribosomal protein L27-A

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 1.1656 s