IL_8P9A_326

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAU*AGUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61476.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

7

Unit IDs

8P9A|1|AR|C|2666
8P9A|1|AR|A|2667
8P9A|1|AR|U|2668
*
8P9A|1|AR|A|2686
8P9A|1|AR|G|2687
8P9A|1|AR|U|2688
8P9A|1|AR|A|2689
8P9A|1|AR|G|2690

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain AS

5S ribosomal RNA; 5S rRNA

Chain CG

60S ribosomal protein L5

Chain CM

Large ribosomal subunit protein uL5B

Chain CV

60S ribosomal protein L21-A

Chain sM

Suppressor protein STM1