IL_8P9A_347

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CU*AUUG

Length

6 nucleotides

Bulged bases

8P9A|1|AR|U|3078, 8P9A|1|AR|U|3079

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P9A_347 not in the Motif Atlas

Homologous match to IL_5TBW_119

Geometric discrepancy: 0.1604

The information below is about IL_5TBW_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

8P9A|1|AR|C|3063
8P9A|1|AR|U|3064
*
8P9A|1|AR|A|3077
8P9A|1|AR|U|3078
8P9A|1|AR|U|3079
8P9A|1|AR|G|3080

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CT

60S ribosomal protein L19-A

Chain DF

60S ribosomal protein L31-A