IL_8P9A_391

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

8P9A|1|sR|U|313, 8P9A|1|sR|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

8P9A|1|sR|U|311
8P9A|1|sR|A|312
8P9A|1|sR|U|313
8P9A|1|sR|C|314
8P9A|1|sR|A|315
8P9A|1|sR|A|316
*
8P9A|1|sR|U|348
8P9A|1|sR|U|349
8P9A|1|sR|U|350
8P9A|1|sR|C|351
8P9A|1|sR|A|352
8P9A|1|sR|A|353
8P9A|1|sR|C|354
8P9A|1|sR|G|355

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain c1

40S ribosomal protein S11-A

Chain d3

40S ribosomal protein S23-A

Chain s8

40S ribosomal protein S8-A