IL_8P9A_394

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGA*UAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.5

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

55

Unit IDs

8P9A|1|sR|G|389
8P9A|1|sR|G|390
8P9A|1|sR|A|391
*
8P9A|1|sR|U|406
8P9A|1|sR|A|407
8P9A|1|sR|C|408

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain CX

60S ribosomal protein L23-A

Chain CY

60S ribosomal protein L24-A

Chain s6

40S ribosomal protein S6-A

Chain s8

40S ribosomal protein S8-A