IL_8P9A_407

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGUAG*UCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

8P9A|1|sR|C|627
8P9A|1|sR|G|628
8P9A|1|sR|U|629
8P9A|1|sR|A|630
8P9A|1|sR|G|631
*
8P9A|1|sR|U|968
8P9A|1|sR|C|969
8P9A|1|sR|A|970
8P9A|1|sR|A|971
8P9A|1|sR|G|972

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain AR

Large subunit ribosomal RNA; LSU rRNA

Chain c1

40S ribosomal protein S11-A

Chain c3

40S ribosomal protein S13

Chain d2

40S ribosomal protein S22-A

Chain d3

40S ribosomal protein S23-A