IL_8P9A_413

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

8P9A|1|sR|U|748
8P9A|1|sR|U|749
8P9A|1|sR|U|750
*
8P9A|1|sR|A|799
8P9A|1|sR|U|800
8P9A|1|sR|G|801

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain c1

40S ribosomal protein S11-A

Chain d2

40S ribosomal protein S22-A

Chain s4

40S ribosomal protein S4-A